Conferences

  1. Extreme-scale many-against-many protein similarity search
    Selvitopi O., Ekanayake S., Guidi G., Awan M., Pavlopoulos GA., Azad A., Kyrpides N., Oliker L., Yelick K., Buluç A.
    ΙΕΕΕ - SC22: International Conference for High Performance Computing, Networking, Storage and Analysis, Dallas, TX, US, 2022 pp. 1-12.
    Nominated for the ACM Gordon Bell Prize award LINK
  2. PASTIS: Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices
    Selvitopi O, Ekanayake S, Guidi G, Pavlopoulos GA, Azad A, Buluc A.
    November 2020, CS20 International Conference for High Performance, Computing, Networking, Storage and Analysis LINK, YouTube
  3. OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction
    Pafilis E, Pavlopoulos GA, Satagopam V, Papanikolaou N, Horn H, Arvanitidis C, Jensen L, Schneider R, Iliopoulos I.
    13th IEEE International Conference on Bioinformatics and Bioengineering (BIBE13), 10-13 Nov 2013, Chania, Crete, Greece LINK
  4. A simple genetic algorithm for cancer biomarker mining
    Popovic D, Sifrim A, Pavlopoulos GA, Moreau Y, De Moor B.
    PRIB2012, Lecture Notes in Computer Science, 7632, pp. 222-232, Springer (2012). LINK
  5. Visualizing High Dimensional Datasets Using Parallel Coordinates: Application to Gene Prioritization
    Boogaerts T, Tranchevent LC, Pavlopoulos GA, Aerts J, Vandewalle J.
    12th IEEE International Conference on Bioinformatics and Bioengineering (BIBE12), Nov. 2012, pp. 1-7, Larnaca, Cyprus. LINK
  6. Mining cell cycle-related literature using support vector machines
    Soldatos TG, Pavlopoulos GA
    SETN 2012, Lecture Notes in Computer Science, 7297, pp. 278-284. Springer, Heidelberg (2012) LINK
  7. Towards better prioritization of epigenetically modified DNA regions
    Iacucci E, Popovic D, Pavlopoulos GA, Tranchevent LC, De Moor B, Moreau Y.
    SETN 2012, Lecture Notes in Computer Science, 7297, pp. 270-277. Springer, Heidelberg (2012) LINK
  8. An enhanced Markov clustering method for detecting protein complexes
    Moschopoulos CN, Pavlopoulos GA Likothanassis SD, Kossida S.
    8th IEEE International Conference on Bioinformatics and Bioengineering, 8-10 October 2008, Athens, Greece. LINK