Extreme-scale many-against-many protein similarity search Selvitopi O., Ekanayake S., Guidi G., Awan M., Pavlopoulos GA., Azad A., Kyrpides N., Oliker L., Yelick K., Buluç A. ΙΕΕΕ - SC22: International Conference for High Performance Computing, Networking, Storage and Analysis, Dallas, TX, US, 2022 pp. 1-12. ACM Gordon Bell Prize awardfinalistLINK
PASTIS: Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices Selvitopi O, Ekanayake S, Guidi G, Pavlopoulos GA, Azad A, Buluc A. November 2020, CS20 International Conference for High Performance, Computing, Networking, Storage and Analysis LINK, YouTube
OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction Pafilis E, Pavlopoulos GA, Satagopam V, Papanikolaou N, Horn H, Arvanitidis C, Jensen L, Schneider R, Iliopoulos I. 13th IEEE International Conference on Bioinformatics and Bioengineering (BIBE13), 10-13 Nov 2013, Chania, Crete, Greece LINK
A simple genetic algorithm for cancer biomarker mining Popovic D, Sifrim A, Pavlopoulos GA, Moreau Y, De Moor B. PRIB2012, Lecture Notes in Computer Science, 7632, pp. 222-232, Springer (2012). LINK
Visualizing High Dimensional Datasets Using Parallel Coordinates: Application to Gene Prioritization Boogaerts T, Tranchevent LC, Pavlopoulos GA, Aerts J, Vandewalle J. 12th IEEE International Conference on Bioinformatics and Bioengineering (BIBE12), Nov. 2012, pp. 1-7, Larnaca, Cyprus. LINK
Mining cell cycle-related literature using support vector machines Soldatos TG, Pavlopoulos GA SETN 2012, Lecture Notes in Computer Science, 7297, pp. 278-284. Springer, Heidelberg (2012) LINK
Towards better prioritization of epigenetically modified DNA regions Iacucci E, Popovic D, Pavlopoulos GA, Tranchevent LC, De Moor B, Moreau Y. SETN 2012, Lecture Notes in Computer Science, 7297, pp. 270-277. Springer, Heidelberg (2012) LINK
An enhanced Markov clustering method for detecting protein complexes Moschopoulos CN, Pavlopoulos GA Likothanassis SD, Kossida S. 8th IEEE International Conference on Bioinformatics and Bioengineering, 8-10 October 2008, Athens, Greece. LINK